Recent Publications

Salim V, Jones AD, DellaPenna D. “Camptotheca acuminata 10-hydroxycamptothecin O-methyltransferase: an alkaloid biosynthetic enzyme coopted from flavonoid metabolism.” Plant J. (2018) Apr 22. doi: 10.1111/tpj.13936

Xue S, Jones AD, Sousa L, Piotrowski J, Jin M, Sarks C, Dale BE, Balan V. “Water-soluble phenolic compounds produced from extractive ammonia pretreatment exerted binary inhibitory effects on yeast fermentation using synthetic hydrolysate.” PLoS One. (2018) 13(3):e0194012. doi: 10.1371/journal.pone.0194012

Bussy U, Chung-Davidson YW, Buchinger T, Li K, Smith SA, Jones AD, Li W. “Metabolism of a sea lamprey pesticide by fish liver enzymes part A: identification and synthesis of TFM metabolites.” Anal Bioanal Chem. (2017) Dec 28;. doi: 10.1007/s00216-017-0830-8

Vismeh R, Haddad D, Moore J, Nielson C, Bals B, Campbell T, Julian A, Teymouri F, Jones AD, Bringi V. “Exposure Assessment of Acetamide in Milk, Beef, and Coffee Using Xanthydrol Derivatization and Gas Chromatography/Mass Spectrometry.” J Agric Food Chem. (2017) Dec 27;. doi: 10.1021/acs.jafc.7b02229

Fan P, Miller AM, Liu X, Jones AD, Last RL. “Evolution of a flipped pathway creates metabolic innovation in tomato trichomes through BAHD enzyme promiscuity.” Nat Commun. (2017) Dec 12;8(1):2080. doi: 10.1038/s41467-017-02045-7

Moghe GD, Leong BJ, Hurney S, Jones AD, Last RL. “Evolutionary routes to biochemical innovation revealed by integrative analysis of a plant-defense related specialized metabolic pathway.” Elife. (2017) Aug 30;. doi: 10.7554/eLife.28468

Pickens CA, Vazquez AI, Jones AD, Fenton JI. “Obesity, adipokines, and C-peptide are associated with distinct plasma phospholipid profiles in adult males, an untargeted lipidomic approach.” Sci Rep. (2017) Jul 24;7(1):6335. doi: 10.1038/s41598-017-05785-0

Nadakuduti SS, Uebler JB, Liu X, Jones AD, Barry CS. “Characterization of trichome-expressed BAHDs in Petunia reveals distinct acylsugar assembly mechanisms.” Plant Physiol. (2017) Jul 12. pii: pp.00538.2017. doi: 10.1104/pp.17.00538

Kuhn MJ, Mavangira V, Gandy JC, Zhang C, Jones AD, Sordillo LM. “Differences in the Oxylipid Profiles of Bovine Milk and Plasma at Different Stages of Lactation.” J Agric Food Chem. (2017) Jun 21;65(24):4980-4988. doi: 10.1021/acs.jafc.7b01602

Mansfeld BN, Colle M, Kang Y, Jones AD, Grumet R. “Transcriptomic and metabolomic analyses of cucumber fruit peels reveal a developmental increase in terpenoid glycosides associated with age-related resistance to Phytophthora capsici.” Hortic Res. (2017) May 24;4:17022. doi: 10.1038/hortres.2017.22

Ghosh B, Jones AD. “Profiling, characterization, and analysis of natural and synthetic acylsugars (sugar esters)” Analytical Methods. (2017) Feb 14; 9(6):892-905. doi: 10.1039/C6AY02944B

Reese KL, Jones AD, Smith RW. “Characterization of smokeless powders using multiplexed collision-induced dissociation mass spectrometry and chemometric procedures.” Forensic Sci Int. (2016) Dec 21;272:16-27. doi: 10.1016/j.forsciint.2016.12.021

Ong RG, Higbee A, Bottoms S, Dickinson Q, Xie D, Smith SA, Serate J, Pohlmann E, Jones AD, Coon JJ, Sato TK, Sanford GR, Eilert D, Oates LG, Piotrowski JS, Bates DM, Cavalier D, Zhang Y. “Inhibition of microbial biofuel production in drought-stressed switchgrass hydrolysate. Biotechnol Biofuels.” (2016) Nov 8;9:237. doi: 10.1186/s13068-016-0657-0

Kang JH, Campos ML, Zemelis-Durfee S, Al-Haddad JM, Jones AD, Telewski FW, Brandizzi F, Howe GA. “Molecular cloning of the tomato Hairless gene implicates actin dynamics in trichome-mediated defense and mechanical properties of stem tissue.” J Exp Bot. (2016) Jul 31. pii: erw292. doi:10.1093/jxb/erw292

Sadre R, Magallanes-Lundback M, Pradhan S, Salim V, Mesberg A, Jones AD, DellaPenna D. “Metabolite diversity in alkaloid biosynthesis: A multi-lane (diastereomer) highway for camptothecin synthesis in Camptotheca acuminata”. Plant Cell. 2016 Jul 18. pii: tpc.00193.2016. doi:10.1105/tpc.16.00193

Najt CP, Senthivinayagam S, Aljazi MB, Fader KA, Olenic SD, Brock JR, Lydic TA, Jones AD, Atshaves BP. “Liver-specific Loss of Perilipin 2 Alleviates Diet-Induced Hepatic Steatosis, Inflammation, and Fibrosis.” Am J Physiol Gastrointest Liver Physiol. (2016) Mar 11;ajpgi.00436.2015. doi:10.1152/ajpgi.00436.2015

Schilmiller AL, Gilgallon K, Ghosh B, Jones AD, Last RL. “Acylsugar Acylhydrolases: Carboxylesterase-Catalyzed Hydrolysis of Acylsugars in Tomato Trichomes.” Plant Physiol. (2016) Mar;170(3):1331-44.

Fan P, Miller AM, Schilmiller AL, Liu X, Ofner I, Jones AD, Zamir D, Last RL. “In vitro reconstruction and analysis of evolutionary variation of the tomato acylsucrose metabolic network.” Proc Natl Acad Sci U S A. (2016) Jan 12;113(2):E239-48. doi:10.1073/pnas.1517930113

Nault R, Fader KA, Kirby MP, Ahmed S, Matthews J, Jones AD, Lunt SY, Zacharewski TR. “Pyruvate Kinase Isoform Switching and Hepatic Metabolic Reprogramming by the Environmental Contaminant 2,3,7,8-Tetrachlorodibenzo-p-Dioxin.” Toxicol Sci. (2016) Feb;149(2):358-71. doi:10.1093/toxsci/kfv245

O'Neill H, Shah R, Evans BR, He J, Pingali SV, Chundawat SP, Jones AD, Langan P, Davison BH, Urban V. “Production of Bacterial Cellulose with Controlled Deuterium-Hydrogen Substitution for Neutron Scattering Studies.” Methods Enzymol. (2015);565:123-46. doi:10.1016/bs.mie.2015.08.031

Chodavarapu S, Jones AD, Feig M, Kaguni JM. “DnaC traps DnaB as an open ring and remodels the domain that binds primase.” Nucleic Acids Res. (2016)Jan 8;44(1):210-20. doi:10.1093/nar/gkv961

Ning J, Moghe GD, Leong B, Kim J, Ofner I, Wang Z, Adams C, Jones AD, Zamir D, Last RL. “A Feedback-Insensitive Isopropylmalate Synthase Affects Acylsugar Composition in Cultivated and Wild Tomato.” Plant Physiol. (2015)Nov;169(3):1821-35. doi:10.1104/pp.15.00474

Ghosh B, Jones AD. “Dependence of negative-mode electrospray ionization response factors on mobile phase composition and molecular structure for newly-authenticated neutral acylsucrose metabolites.” Analyst. (2015)Oct 7;140(19):6522-31. doi:10.1039/c4an02124j

Schilmiller AL, Moghe GD, Fan P, Ghosh B, Ning J, Jones AD, Last RL. “Functionally divergent alleles and duplicated Loci encoding an acyltransferase contribute to acylsugar metabolite diversity in Solanum trichomes.” Plant Cell. (2015)Apr;27(4):1002-17. doi:10.1105/tpc.15.00087

Matsuba Y, Zi J, Jones AD, Peters RJ, Pichersky E. “Biosynthesis of the diterpenoid lycosantalonol via nerylneryl diphosphate in Solanum lycopersicum.” PLoS One. (2015);10(3):e0119302. doi:10.1371/journal.pone.0119302

Ekanayaka EA, Celiz MD, Jones AD. “Relative mass defect filtering of mass spectra: a path to discovery of plant specialized metabolites.” Plant Physiol. (2015)Apr;167(4):1221-32. doi:10.1104/pp.114.251165

Mcllroy JW, Jones AD, McGuffin VL. “Gas chromatographic retention index as a basis for predicting evaporation rates of complex mixtures.” Anal Chim Acta. (2014)Dec 10;852:257-66. doi:10.1016/j.aca.2014.08.055

Wang Z, Jones AD. “Profiling of stable isotope enrichment in specialized metabolites using liquid chromatography and multiplexed nonselective collision-induced dissociation.” Anal Chem. (2014)Nov 4;86(21):10600-7. doi:10.1021/ac502205y

Appel HM, Maqbool SB, Raina S, Jagadeeswaran G, Acharya BR, Hanley JC Jr, Miller KP, Hearnes L, Jones AD, Raina R, Schultz JC. “Transcriptional and metabolic signatures of Arabidopsis responses to chewing damage by an insect herbivore and bacterial infection and the consequences of their interaction.” Front Plant Sci. (2014);5:441. doi:10.3389/fpls.2014.00441

Bedewitz MA, GÛngora-Castillo E, Uebler JB, Gonzales-Vigil E, Wiegert-Rininger KE, Childs KL, Hamilton JP, Vaillancourt B, Yeo YS, Chappell J, DellaPenna D, Jones AD, Buell CR, Barry CS. “A root-expressed L-phenylalanine:4-hydroxyphenylpyruvate aminotransferase is required for tropane alkaloid biosynthesis in Atropa belladonna.” Plant Cell. (2014)Sep;26(9):3745-62. doi:10.1105/tpc.114.130534