Recent Publications
Springer N, de León N, Grotewold E. “Challenges of Translating Gene Regulatory Information into Agronomic Improvements.” Trends Plant Sci. (2019) Jul 31. doi: 10.1016/j.tplants.2019.07.004
Milutinovic M, Lindsey BE 3rd, Wijeratne A, Hernandez JM, Grotewold N, Fernández V, Grotewold E, Brkljacic J. “Arabidopsis EMSY-like (EML) histone readers are necessary for post-fertilization seed development, but prevent fertilization-independent seed formation.” Plant Sci. (2019) Aug;285:99-109. doi: 10.1016/j.plantsci.2019.04.007
Jones MA, Morohashi K, Grotewold E, Harmer SL. “Arabidopsis JMJD5/JMJ30 Acts Independently of LUX ARRHYTHMO Within the Plant Circadian Clock to Enable Temperature Compensation.” Front Plant Sci. (2019) Feb 1;10:57. doi: 10.3389/fpls.2019.00057
Cocuron JC, Casas MI, Yang F, Grotewold E, Alonso AP. “Beyond the wall: High-throughput quantification of plant soluble and cell-wall bound phenolics by liquid chromatography tandem mass spectrometry.” J Chromatogr A. (2018) Dec 26. doi: 10.1016/j.chroma.2018.12.059
Kovinich N, Wang Y, Adegboye J, Chanoca AA, Otegui MS, Durkin P, Grotewold E. “Arabidopsis MATE45 antagonizes local abscisic acid signaling to mediate development and abiotic stress responses.” Plant Direct. (2018) Oct;2(10):e00087. doi: 10.1002/pld3.87
Silva GFF, Silva EM, Correa JPO, Vicente MH, Jiang N, Notini MM, Junior AC, De Jesus FA, Castilho P, Carrera E, Lopes-Diaz I, Grotewold E, Peres LEP, Nogueira FTS. “Tomato floral induction and flower development are orchestrated by the interplay between gibberellin and two unrelated microRNA-controlled modules.” New Phytol. (2018) Sep 20. doi: 10.1111/nph.15492
Righini S, Rodriguez EJ, Berosich C, Grotewold E, Casati P, Falcone Ferreyra ML. “Apigenin produced by maize flavone synthase I and II protects plants against UV-B-induced damage.” Plant Cell Environ. (2018) Aug 30. doi: 10.1111/pce.13428
Mejia-Guerra MK, Li W, Doseff AI, Grotewold E. “Genome-Wide TSS Identification in Maize.” Methods Mol Biol. (2018) 1830:239-256. doi: 10.1007/978-1-4939-8657-6_14
Chanoca A, Burkel B, Grotewold E, Eliceiri KW, Otegui MS. “Imaging Vacuolar Anthocyanins with Fluorescence Lifetime Microscopy (FLIM).” Methods Mol Biol. (2018) Jun 19;1789:131-141. doi: 10.1007/978-1-4939-7856-4_10
Ouma WZ, Pogacar K, Grotewold E. “Topological and statistical analyses of gene regulatory networks reveal unifying yet quantitatively different emergent properties.” PLoS Comput Biol. (2018) Apr;14(4):e1006098. doi: 10.1371/journal.pcbi.1006098
Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, Gonzales M, Grotewold E, Gutierrez R, Kramer U, Krouk G, Ma S, Markelz RJC, Megraw M, Meyers BC, Murray JAH, Provart NJ, Rhee S, Smith R, Spalding EP, Taylor C, Teal TK, Torii KU, Town C, Vaughn M, Vierstra R, Ware D, Wilkins O, Williams C, Brady SM. “The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.” Plant Physiol. (2017) Dec;175(4):1499-1509. doi: 10.1104/pp.17.01490
Lindsey BE 3rd, Rivero L, Calhoun CS, Grotewold E, Brkljacic J. “Standardized Method for High-throughput Sterilization of Arabidopsis Seeds.” J Vis Exp. (2017) Oct 17. doi: 10.3791/56587
Feller A, Yuan L, Grotewold E. “The BIF Domain in Plant bHLH Proteins Is an ACT-Like Domain.” Plant Cell. (2017) Aug;29(8):1800-1802. doi: 10.1105/tpc.17.00356
Mukundi E, Gomez-Cano F, Ouma WZ, Grotewold E. “Design of Knowledge Bases for Plant Gene Regulatory Networks.” Methods Mol Biol. (2017) 1629:207-223. doi: 10.1007/978-1-4939-7125-1_14
Casas MI, Vaughan MJ, Bonello P, McSpadden Gardener B, Grotewold E, Alonso AP. “Identification of biochemical features of defective Coffea arabica L. beans.” Food Res Int. (2017) May;95:59-67. doi: 10.1016/j.foodres.2017.02.015
McCluskey K, Boundy-Mills K, Dye G, Ehmke E, Gunnell GF, Kiaris H, Polihronakis Richmond M, Yoder AD, Zeigler DR, Zehr S, Grotewold E. “The challenges faced by living stock collections in the USA.” Elife. (2017) Mar 13;. doi: 10.7554/eLife.24611
Francis D, Finer JJ, Grotewold E. “Challenges and opportunities for improving food quality and nutrition through plant biotechnology.” Curr Opin Biotechnol. (2017) Apr;44:124-129. doi: 10.1016/j.copbio.2016.11.009
Iwase A, Harashima H, Ikeuchi M, Rymen B, Ohnuma M, Komaki S, Morohashi K, Kurata T, Nakata M, Ohme-Takagi M, Grotewold E, Sugimoto K. “WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.” Plant Cell. (2017) Jan;29(1):54-69. doi: 10.1105/tpc.16.00623
Yang F, Li W, Jiang N, Yu H, Morohashi K, Ouma WZ, Morales-Mantilla DE, Gomez-Cano FA, Mukundi E, Prada-Salcedo LD, Velazquez RA, Valentin J, Mejía-Guerra MK, Gray J, Doseff AI, Grotewold E. “A Maize Gene Regulatory Network for Phenolic Metabolism.” Mol Plant. (2017) Mar 6;10(3):498-515. doi: 10.1016/j.molp.2016.10.020
Grotewold E, Springer NM. “News from the plant world: Listening to transcription.” Biochim Biophys Acta. (2017) Jan;1860(1):1-2. doi: 10.1016/j.bbagrm.2016.11.004
Chanoca A, Burkel B, Kovinich N, Grotewold E, Eliceiri KW, Otegui MS. “Using fluorescence lifetime microscopy to study the subcellular localization of anthocyanins.” Plant J. (2016) Dec;88(5):895-903. doi: 10.1111/tpj.13297
Yang F, Ouma WZ, Li W, Doseff AI, Grotewold E. “Establishing the Architecture of Plant Gene Regulatory Networks.” Methods Enzymol. (2016) 576:251-304. doi: 10.1016/bs.mie.2016.03.003
Brkljacic J, Grotewold E. “Combinatorial control of plant gene expression.” Biochim Biophys Acta. (2017) Jan;1860(1):31-40. doi: 10.1016/j.bbagrm.2016.07.005
Jiang N, Doseff AI, Grotewold E. “Flavones: From Biosynthesis to Health Benefits.” Plants (Basel). (2016) Jun 21;5:(2). doi: 10.3390/plants5020027
Agarwal T, Grotewold E, Doseff AI, Gray J. “MYB31/MYB42 Syntelogs Exhibit Divergent Regulation of Phenylpropanoid Genes in Maize, Sorghum and Rice.” Sci Rep. (2016) Jun 22;6:28502. doi: 10.1038/srep28502
Casas MI, Falcone-Ferreyra ML, Jiang N, Mejía-Guerra MK, Rodríguez E, Wilson T, Engelmeier J, Casati P, Grotewold E. “Identification and Characterization of Maize salmon silks Genes Involved in Insecticidal Maysin Biosynthesis.” Plant Cell. (2016) Jun;28(6):1297-309. doi: 10.1105/tpc.16.00003
Cardenas H, Arango D, Nicholas C, Duarte S, Nuovo GJ, He W, Voss OH, Gonzalez-Mejia ME, Guttridge DC, Grotewold E, Doseff AI. “Dietary Apigenin Exerts Immune-Regulatory Activity in Vivo by Reducing NF-κB Activity, Halting Leukocyte Infiltration and Restoring Normal Metabolic Function.” Int J Mol Sci. (2016) Mar 1;17(3):323. doi: 10.3390/ijms17030323
Grotewold E. “Flavonols drive plant microevolution.” Nat Genet. (2016) Feb;48(2):112-3. doi: 10.1038/ng.3490
Mejía-Guerra MK, Li W, Galeano NF, Vidal M, Gray J, Doseff AI, Grotewold E. “Core Promoter Plasticity Between Maize Tissues and Genotypes Contrasts with Predominance of Sharp Transcription Initiation Sites.” Plant Cell. (2015) Dec;27(12):3309-20. doi: 10.1105/tpc.15.00630
Wang HZ, Yang KZ, Zou JJ, Zhu LL, Xie ZD, Morita MT, Tasaka M, Friml J, Grotewold E, Beeckman T, Vanneste S, Sack F, Le J. “Transcriptional regulation of PIN genes by FOUR LIPS and MYB88 during Arabidopsis root gravitropism.” Nat Commun. (2015) Nov 18;6:8822. doi: 10.1038/ncomms9822
Chen Q, Liu Y, Maere S, Lee E, Van Isterdael G, Xie Z, Xuan W, Lucas J, Vassileva V, Kitakura S, Marhavý P, Wabnik K, Geldner N, Benková E, Le J, Fukaki H, Grotewold E, Li C, Friml J, Sack F, Beeckman T, Vanneste S. “A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development.” Nat Commun. (2015) Nov 18;6:8821. doi: 10.1038/ncomms9821
Vélez-Bermúdez IC, Salazar-Henao JE, Fornalé S, López-Vidriero I, Franco-Zorrilla JM, Grotewold E, Gray J, Solano R, Schmidt W, Pagés M, Riera M, Caparros-Ruiz D. “A MYB/ZML Complex Regulates Wound-Induced Lignin Genes in Maize.” Plant Cell. (2015) Nov;27(11):3245-59. doi: 10.1105/tpc.15.00545
Provart NJ, Alonso J, Assmann SM, Bergmann D, Brady SM, Brkljacic J, Browse J, Chapple C, Colot V, Cutler S, Dangl J, Ehrhardt D, Friesner JD, Frommer WB, Grotewold E, Meyerowitz E, Nemhauser J, Nordborg M, Pikaard C, Shanklin J, Somerville C, Stitt M, Torii KU, Waese J, Wagner D, McCourt P. “50 years of Arabidopsis research: highlights and future directions.” New Phytol. (2016) Feb;209(3):921-44. doi: 10.1111/nph.13687
Chanoca A, Kovinich N, Burkel B, Stecha S, Bohorquez-Restrepo A, Ueda T, Eliceiri KW, Grotewold E, Otegui MS. “Anthocyanin Vacuolar Inclusions Form by a Microautophagy Mechanism.” Plant Cell. (2015) Sep;27(9):2545-59. doi: 10.1105/tpc.15.00589
Falcone Ferreyra ML, Emiliani J, Rodriguez EJ, Campos-Bermudez VA, Grotewold E, Casati P. “The Identification of Maize and Arabidopsis Type I FLAVONE SYNTHASEs Links Flavones with Hormones and Biotic Interactions.” Plant Physiol. (2015) Oct;169(2):1090-107. doi: 10.1104/pp.15.00515
Kovinich N, Kayanja G, Chanoca A, Otegui MS, Grotewold E. “Abiotic stresses induce different localizations of anthocyanins in Arabidopsis.” Plant Signal Behav. (2015) 10(7):e1027850. doi: 10.1080/15592324.2015.1027850
Ouma WZ, Mejia-Guerra MK, Yilmaz A, Pareja-Tobes P, Li W, Doseff AI, Grotewold E. “Important biological information uncovered in previously unaligned reads from chromatin immunoprecipitation experiments (ChIP-Seq).” Sci Rep. (2015) Mar 2;5:8635. doi: 10.1038/srep08635
Yuan L, Grotewold E. “Metabolic engineering to enhance the value of plants as green factories.” Metab Eng. (2015) Jan;27:83-91. doi: 10.1016/j.ymben.2014.11.005
Casas MI, Duarte S, Doseff AI, Grotewold E. “Flavone-rich maize: an opportunity to improve the nutritional value of an important commodity crop.” Front Plant Sci. (2014) 5:440. doi: 10.3389/fpls.2014.00440
Burdo B, Gray J, Goetting-Minesky MP, Wittler B, Hunt M, Li T, Velliquette D, Thomas J, Gentzel I, dos Santos Brito M, Mejía-Guerra MK, Connolly LN, Qaisi D, Li W, Casas MI, Doseff AI, Grotewold E. “The Maize TFome--development of a transcription factor open reading frame collection for functional genomics.” Plant J. (2014) Oct;80(2):356-66. doi: 10.1111/tpj.12623
Kovinich N, Kayanja G, Chanoca A, Riedl K, Otegui MS, Grotewold E. “Not all anthocyanins are born equal: distinct patterns induced by stress in Arabidopsis.” Planta. (2014) Nov;240(5):931-40. doi: 10.1007/s00425-014-2079-1
Zhiponova MK, Morohashi K, Vanhoutte I, Machemer-Noonan K, Revalska M, Van Montagu M, Grotewold E, Russinova E. “Helix-loop-helix/basic helix-loop-helix transcription factor network represses cell elongation in Arabidopsis through an apparent incoherent feed-forward loop.” Proc Natl Acad Sci U S A. (2014) Feb 18;111(7):2824-9. doi: 10.1073/pnas.1400203111
Eveland AL, Goldshmidt A, Pautler M, Morohashi K, Liseron-Monfils C, Lewis MW, Kumari S, Hiraga S, Yang F, Unger-Wallace E, Olson A, Hake S, Vollbrecht E, Grotewold E, Ware D, Jackson D. “Regulatory modules controlling maize inflorescence architecture.” Genome Res. (2014) Mar;24(3):431-43. doi: 10.1101/gr.166397.113
Li D, Dreher K, Knee E, Brkljacic J, Grotewold E, Berardini TZ, Lamesch P, Garcia-Hernandez M, Reiser L, Huala E. “Arabidopsis database and stock resources.” Methods Mol Biol. (2014) 1062:65-96. doi: 10.1007/978-1-62703-580-4_4
Rivero L, Scholl R, Holomuzki N, Crist D, Grotewold E, Brkljacic J. “Handling Arabidopsis plants: growth, preservation of seeds, transformation, and genetic crosses.” Methods Mol Biol. (2014) 1062:3-25. doi: 10.1007/978-1-62703-580-4_1