Undergraduate Publications
| 2019 | ||
|---|---|---|
| Student | Publication | Mentor |
| Jaideep Prasad | “Diversification of Retinoblastoma Protein Function Associated with Cis and Trans Adaptations" Molecular Biology and Evolution, (2019). Authors: Rima Mouawad, Jaideep Prasad, Dominic Thorley, Pamela Himadewi, Dhruva Kadiyala, Nathan Wilson, Philipp Kapranov, David N Arnosti. |
David Arnosti |
| Sean Hyslop | “SLAMF7 Is a Critical Negative Regulator of IFN-α–Mediated CXCL10 Production in Chronic HIV Infection." The Journal of Immunology, (2019) 202(1):228-238. Authors: O’Connell P, Pepelyayeva Y, Blake MK, Hyslop S, Crawford RB, Rizzo MD, Pereira-Hicks C, Godbehere S, Dale L, Gulick P, Kaminski NE, Amalfitano A, Aldhamen YA. |
Yasser Aldhamen |
| 2018 | ||
| Student | Publication | Mentor |
| David Dickson | “The 27 kDa Trypanosoma brucei Pentatricopeptide Repeat Protein is a G-tract Specific RNA Binding Protein.” Scientific Reports. 2018 Nov 19;8(1):16989 Authors: Kamba PF, Dickson DA, White NA, Ekstrom JL, Koslowsky DJ, Hoogstraten CG. |
Charles Hoogstraten |
| Raghav Jain | “Association of whole blood n-6 fatty acids with stunting in 2-to-6-year-old Northern Ghanaian children: A cross-sectional study.” PLoS One (2018) 13(3):e0193301. doi: 10.1371/journal.pone.0193301 Authors: Adjepong M, Pickens CA, Jain R, Harris WS, Annan RA, Fenton JI. |
Jenifer Fenton |
| Raghav Jain | “The role of the lipidome in obesity-mediated colon cancer risk.” J Nutr Biochem (2018) 59:1-9. doi: 10.1016/j.jnutbio.2018.02.015 Authors: Jain R, Austin Pickens C, Fenton JI |
Jenifer Fenton |
| 2017 | ||
| Student | Publication | Mentor |
| Kasey Pham | “A time and place for everything: The shifting predictors of variation in the oak plastome.” Genome (2017) 60(9):720-732. doi: 10.1139/gen-2016-0191 Authors: Kasey Pham, Andrew L. Hipp, Paul S. Manos, Richard C. Cronn. |
Paul S. Manos |
| 2016 | ||
| Student | Publication | Mentor |
| Chris Bailey | “Optimal allosteric stabilization sites using contact stabilization analysis.” Computational Chemistry (2016) Oct 24; doi: 10.1002/jcc.24517. Authors: Dickson A, Bailey CT, Karanicolas J |
Dr. Alex Dickson |
| Hope Hersh | "SENSITIVE TO FREEZING2 Aides in Resilience to Salt and Drought in Freezing-Sensitive Tomato." Plant Physiol (2016) Nov;172(3):1432-1442. doi: 10.1104/pp.16.01183 Authors: Wang K, Hersh HL, Benning C |
Dr. Christoph Benning |
| Kasey Pham | "Specimens at the Center: An Informatics Workflow and Toolkit for Specimen-level Analysis of Public DNA Database Data." Systematic Botany. (2016) 41(3):529-539 doi: 10.1600/036364416X692505 Authors: Pham K, et al. |
Dr. L. Alan Prather |
| Kasey Pham | "Training the Next Generation of Sedge Taxonomists: School Kids Tackle Sedge Morphological Diversity." Systematic Botany. (2016) 41(3):540-551 doi: 10.1600/036364416X692479 Authors: Hann M, Budaitis B, Grant J, Wetta D, Murphy P, Cotton A, Pham K, Hipp AL |
Dr. L. Alan Prather |
| 2015 | ||
| Student | Publication | Mentor |
| MinJae Kim | “Epigenetic modification and antibody-dependent expansion of memory-like NK cells in human cytomegalovirus-infected individuals.” Immunity 42(3) (March 2017): 432-42. doi:10.1016/j.immuni.2015.02.013 Authors: Jaewon Lee, Tianxing Zhang, Ilwoong Hwang, Ahrom Kim, Larissa Nitschke, MinJae Kim, Jeannine Scott, Yosuke Kamimura, Lewis Lanier, Sungjin Kim. |
Sungjin Kim |
| Michael Connolly | “Evidence that progestins play an important role in spermiation and pheromone production in male sea lamprey (Petromyzon marinus).” General and Comparative Endocrinolog 212 (February 2015): 17-27. 2015. doi:10.1016/j.ygcen.2015.01.008. Authors: Bryan MB, Chung-Davidson YW, Ren J, Bowman S, Scott AP, Huertas M, Connolly MP, Li W. |
Dr. Weiming Li |
| Jessica E Mizzi | "Temperature-dependent polymorphism and magnetic Properties of three-dimensional copper pyromellitate coordination Polymers containing 4, 4′-dipyridylamine." Journal of Solid State Chemistry 225 (2015): 222-30. doi:10.1016/j.jssc.2014.12.021 Authors: Mizzi JE, Staples RJ, LaDuca RL |
Dr. Robert LaDuca |
| Lance Valls | "Identification of a Key Cholesterol Binding Enhancement Motif in Translocator Protein 18 kDa" Biochemistry 2015, 54 (7), pp 1441–1443 doi:10.1021/bi5015453 Authors: Li F, Liu J, Valls L, Hiser C, Ferguson-Miller S. |
Dr. Shelagh Ferguson-Miller |
| 2014 | ||
| Student | Publication | Mentor |
| Spiro E. Papoulis | "Coexistence of evolving bacteria stabilized by shared black queen function." Evolution 68, no. 10 (October 2014): 2960-71. doi:10.1111/evo.12485. Authors: Morris JJ, Papoulis SE, Lenski RE |
Dr. Richard Lenski |
| Jessica E. Mizzi | "Divalent metal pyromellitate coordination polymers containing bis (4-pyridylformyl) piperazine: Selection between simple chain and rare fsc network topologies" Inorganica Chimica Acta 421 (September 2014): 183-90. doi:10.1016/j.ica.2014.05.038 Authors: Mizzi JE, LaDuca RL |
Dr. Robert LaDuca |
| Aaron L. Oom | “MicroRNA-200b targets protein kinase C and suppresses triple-negative breast cancer metastasis.” Carcinogenesis 35, no. 10 (September 2014): 2254-63. Authors: Humphries B, Wang Z, Oom AL, Fisher T, Tan D, Cui Y, Jiang Y, Yang C. |
Dr. Chengfeng Yang |
| Irina Pushel | "Integrated Stability and Activity Control of the Drosophila Rbf1 Retinoblastoma Protein*" The Journal of Biological Chemistry 289.36, 24863–24873. (September 2014) doi:10.1074/jbc.M114.586818 Authors: Zhang L, Wei Y, Pushel I, HeInze K, Elenbaas J, Henry RW, Arnosti DN |
Dr. David Arnosti |
| Jessica E. Mizzi | "Effect of Substituents on Topology and in situ Amide Hydrolysis on Cadmium Isophthalate Coordination Polymers Prepared Using a 4Pyridylnicotinamide Precursor." Zeitschrift für anorganische und allgemeine Chemie 640, no. 10 (August 2014): 1922-29. (February 2014): 188-98. doi:10.1002/zaac.201400134 Authors: O'Donovan ME, Kraft PE, Mizzi JE, LaDuca RL |
Dr. Robert LaDuca |
| Jessica E. Mizzi | "Structural chemistry and magnetic properties of copper pyromellitate coordination polymers containing pyridylnicotinamide ligands." doi:10.1016/j.ica.2013.11.007 Inorganica Chimica Acta 411 (February 2014): 188-98. Authors: Mizzi JE, LaDuca RL |
Dr. Robert LaDuca |
| Jessica E. Mizzi | "Divalent metal sulfoisophthalate coordination polymers with isomeric pyridylnicotinamide coligands." Inorganica Chimica Acta 409 (January 2014): 449-57. doi:10.1016/j.ica.2013.10.003 Authors: Kraft PE, Mizzi JE, LaDuca RL |
Dr. Robert LaDuca |
| Aaron L. Oom | "MicroRNAs: Novel Players in Cancer Diagnosis and Therapies" BioMed Research International 2014, no. 4 (2014): 1-13. Authors: Humphries B, Wang Z, Oom AL, Fisher T, Tan D, Cui Y, Jiang Y, Yang C |
Dr. Chengfeng Yang |
| 2013 | ||
| Student | Publication | Mentor |
| Hailey Miller | "Temporal dynamics of changes in reactive oxygen species (ROS) levels and cellular morphology are coordinated during complementary chromatic acclimation in Fremyella diplosiphon." Photosynthesis Research, 118(1-2), 95-104. (2013) doi:10.1007/s11120-013-9938-7 Authors: Singh, SP, Miller, H L, & Montgomery, BL. |
Dr. Beronda L. Montgomery |
| David Hall | "Analysis of essential Arabidopsis nuclear genes encoding plastid - targeted proteins." PLoSONE. (2013) In press. doi:10.1371/journal.pone.0073291 Authors: Savage, L.J., Imre, K., Hall, D.A. and R.L. Last. |
Dr. Robert Last |
| Josh Andaloro | "Transorganellar complementation redefines the biochemical continuity of endoplasmic reticulum and chloroplasts" PNAS: 2013 Jul 1. [Epub ahead of print] doi:10.1073/pnas.1306331110 Authors: Mehrshahi P, Stefano G, Andaloro JM, Brandizzi F, Froehlich JE, Dellapenna D |
Dr. Dean DellaPenna |
| Keenan Noyes | "Physics based protein structure refinement through multiple molecular dynamics trajectories and structure averaging" Proteins: 2013 Jun 5. doi: 10.1002/prot.24336. doi:10.1002/prot.24336 Authors: Mirjalili V, Noyes K , Feig M. |
Dr. Michael Feig |
| Kenneth Walters | "Light intensity and reactive oxygen species are centrally involved in photoregulatory responses during complementary chromatic adaptation in Fremyella diplosiphon." Communicative and Integrative Biology, May/June 2013, Volume 6, Issue 3 doi:10.4161/cib.25005 Authors: Walters, KJ, Whitaker, MJ, Singh, SP, Montgomery, BL. |
Dr. Beronda L. Montgomery |
| Kristopher Opron & Fadi Assaf |
"The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation. BBA Gene Regulatory Mechanisms Feb. 2013, Volume 1829, Issue 2 187-198. doi:10.1016/j.bbagrm.2012.11.005. Authors: Nedialkov, Y.A., Opron, K., Assaf, F., Artsimovitch, I., Kireeva, M.L., Kashlev, M., Cukier, R.I., Nudler, E., and Burton, Z.F. |
Dr. Zachary F. Burton |
| Lance Valls | "Characterization of Cholesterol and Drug Ligand Interactions with Translocator Protein 18 KDA (TSPO) from Rhodobacter Sphaeroides" Biophysical Journal Vol.106, Issue 2 doi:10.1016/j.bpj.2013.11.128 Authors: Li F, Valls L, Ferguson-Miller S. |
Dr. Shelagh Ferguson-Miller |
| 2012 | ||
| Student | Publication | Mentor |
| Jiajun Zhou | "Evidence for Vpr-dependent HIV-1 Replication in Human CD4+ CEM.NKR T-Cells" Retrovirology 2012, 9:93 doi:10.1186/1742-4690-9-93 Authors: Zhou T, Dang Y, Baker JJ, Zhou J and Zheng Y-H |
Dr. Yong-Hui Zheng |
| Cassandra Johnny | "A galactoglycerolipid lipase is required for triacylglycerol accumulation and survival following nitrogen deprivation in Chlamydomonas reinhardtii." Plant Cell. 2012 Nov;24(11):4670-86. doi:10.1105/tpc.112.105106. Epub 2012 Nov 16. Authors: Li X, Moellering ER, Liu B, Johnny C, Fedewa M, Sears BB, Kuo MH, Benning C. |
Dr. Min Hao Kuo and Dr. Christoph Benning |
| Kastuv Santra | "N-Acetyl-seryl-aspartyl-lysyl-proline inhibits ET-1-induced collagen production by preserving Src homology 2-containing protein tyrosine phosphatase-2 activity in cardiac fibroblasts." Pflugers Arch 2012 Oct;464(4):415-23. Epub 2012 Sep 12 doi:10.1007/s00424- 012-1150-7 Authors: Peng H, Carretero OA, Peterson EL, Yang XP, Santra K, Rhaleb NE. |
Dr. Noor Rahleb |
| Josh Smith | "Identification of small molecules that antagonize diguanylate cyclase enzymes to inhibit biofilm formation." Antimicrob Agents Chemother 2012 Oct;56(10):5202-11. doi:10.1128/AAC.01396-12. Epub 2012 Jul 30. Authors: Sambanthamoorthy K, Sloup RE, Parashar V, Smith JM, Kim EE, Semmelhack MF, Neiditch MB, Waters CM. |
Christopher M. Waters |
| Jonathan P. Massie | "Quantification of high-specificity cyclic diguanylate signaling." Proc. Nat. Acad. Sci. Volume 109, No. 31, 12746-12751, July 2012 doi:10.1073/pnas.1115663109 Authors: Massie, J., Reynolds, E., Koestler, B, Cong, J, Agostoni, M, and Waters, C. |
Christopher M. Waters |
| Toufic Jildeh | "Vitamin D3 Alters the Crystallization and Volume Expansion of Cholesterol*" Journal of Clinical Lipidology Volume 6, Issue 3 , Page 282, May 2012 doi:10.1016/j.jacl.2012.04.060 Authors: Toufic R. Jildeh, BS, Abed Janoudi, PhD, George S. Abela, MD |
Dr. George S. Abela |
| Urs Benning | "New aspects of phloem-mediated long-distance lipid signaling in plants." Front. Plant. Sci. Mar 28 ,2012. doi:10.3389/fpls.2012.00053 Authors: Benning, U.F., Tamot, B., Guelette, B.S., and Hoffmann-Benning, S. "Identification of lipids and lipid-binding proteins in phloem exudates from Arabidopsis thaliana". Journal of Experimental Botany. March 2012. doi:10.1093/jxb/ers028 Authors: Guelette, B.S, Benning, U.F., Chamberlin, B., and Hoffmann-Benning, S |
Susanne Hoffmann-Benning |
| Thomas F. Cooke and Cody L. Depew |
"JAZ8 lacks a canonical degron and has an EAR motif that mediates transcriptional repression of Jasmonate responses in Arabidopsis." Plant Cell. 2012 Feb 10. doi:10.1105/tpc.111.093005 Authors: Shyu C, Figueroa P, Depew CL, Cooke TF, Sheard LB, Moreno JE, Katsir L, Zheng N, Browse J, Howe GA. |
Gregg A. Howe |
| Dena Shahriari | "Time controlled release of Arabino-furanosylcytosine (Ara-C) from agarose hydrogels using layer-by-layer assembly: AniIn-vitro study." Journal of Biomaterials Science, Polymer Edition, 23: 439–463. 2012 doi:10.1163/092050610X552221 Authors: Mehrotra, S., Lynam, D., Liu, C., Shahriari, D., Lee, I., Tuszynski, M., Sakamoto, J., and Chan, C., |
Dr. Christina Chan |
| 2011 | ||
| Student | Publication | Mentor |
| Ardian Coku | A J-like protein influences fatty acid composition of chloroplast lipids in Arabidopsis. PLoS ONE 2011 6(10): e25368. doi:10.1371/journal.pone.0025368 Authors: Ajjawi I, Coku A, Froehlich JE, Yang Y, Osteryoung KW, Benning C, Last RL. |
Dr. Robert Last |
| David Hall | A small zinc finger thylakoid protein plays a 4ole in maintenance of photosystem II in Arabidopsis thaliana. Plant Cell 2011 23(5): 1861-1875. doi:10.1105/tpc.111.085456 Plant Cell Authors: Lu Y, Hall DA, Last RL. |
Dr. Robert Last |
| Amy M. Abramczyk Linsey C. Seitz |
cAMP initiates early-phase neuron-like morphological changes and late-phase neural differentiation and function in mesenchymal stem cells. Cellular and Molecular Life Sciences 2011 68(5):863-876. doi:10.1007/s00018-010-0497-1 Authors: Zhang, L., Seitz, L. C., Abramczyk, A. M., and Chan, C. |
Dr. Christina Chan |
| Kastuv Santra | Effect of doublecortin on self-renewal and differentiation in brain tumor stem cells. Cancer Sci. 2011 Jul;102(7):1350-7. doi:10.1111/j.1349-7006.2011.01952.x. Epub 2011 May 10. Authors: Santra M, Santra S, Buller B, Santra K, Nallani A, Chopp M. |
Dr. Michael Chopp |
| Steven R. Breneman Lauren A. Topper |
Biochemical characterization and homology modeling of methylbutenol synthase and implications for understanding hemiterpene synthase evolution in plants. J. Biol. Chem. June 2011 286:20582-20590. doi:10.1074/jbc.M111.237438 Authors: Gray DW, Breneman SR, Topper LA, Sharkey TD. |
Dr. Thomas D. Sharkey |
| Thomas F. Cooke | Cytochrome P450 CYP94B3 mediates catabolism and inactivation of the plant hormone jasmonoyl-L-isoleucine. Proc Natl Acad Sci U S A. 2011 May 16. Epub ahead of print. doi:10.1073/pnas.1103542108 Authors: Koo AJ, Cooke TF, Howe GA |
Dr. Gregg A. Howe |
| Elizabeth Grier | The loss of HIF1α leads to an increased susceptibility to cadmium chloride-induced toxicity in mouse embryonic fibroblast. J Toxicol 2011. Epub Jul 17. doi:10.1155/2011/391074 Authors: Vengellur A, Grier E, LaPres JJ |
Dr. John J LaPres |
| Emma Darios | Agonist Discrimination between Uterine and Cervical Contractility (The FASEB Journal. April 2011;25:806.4) Authors: Darios ES and Watts SW. |
Dr. Stephanie W. Watts |
| Michael J. Howard | Escherichia coli alkylation response protein AidB is a redox partner of flavodoxin and binds RNA and acyl carrier protein. Arch. Biochem. Biophys. 2011. 513(2):81-6. doi:10.1016/j.abb.2011.07.004 Authors: Mulrooney SB, Howard MJ, Hausinger RP. |
Robert P. Hausinger |
| Adam J. Jaskierny | Effect of flanking residues on the conformational sampling of the internal fusion peptide from Ebola virus. 2011. Proteins. 79(4):1109-17. doi:10.1002/prot.22947 Authors: Jaskierny AJ, Panahi A, Feig M. |
Michael Feig |
| Jun-seok Lee Paul M. Luethy Bongjun Son |
Combinatorial regulation of fmgD by MrpC2 and FruA during Myxococcus xanthus development. 2011. J. Bacteriol. 193:1681-1689. doi:10.1128/JB.01541-10 Authors: Lee JS, Son B, Viswanathan P, Luethy PM, and Kroos L. |
Lee R. Kroos |
| Yu Liu Bongjun Son |
Combinatorial regulation by MrpC2 and FruA involves three sites in the fmgE promoter region during Myxococcus xanthus development doi:10.1128/JB.00205-11 Authors: Son B, Liu Y, Kroos L. |
Lee R. Kroos |
| Catherine Nezich Pratheeba Palasuberniam Lisa Pillow |
Molecular mechanism by which palmitate inhibits PKR autophosphorylation 2011. Biochemistry 50(6):1110-1119. doi:10.1021/bi101923r Authors: Cho, H. J., Mukherjee, S., Palasuberniam, P., Pillow, L., Bilgin, B., Nezich, C. L., Walton, S. P., Feig, M., and Chan, C |
Christina Chan |
| Ellen A. Ratliff | Effect of temperature on postillumination isoprene emission in oak and poplar. Plant Physiol. 155, 1037-1046. doi:10.1104/pp.110.167551 Authors: Li Z, Ratliff EA, Sharkey TD. |
Thomas D. Sharkey |
| Kimberly R. Struck | The effects of moderately high temperature on zeaxanthin accumulation and decay. Photosynth. Res. 108, 171-181. doi:10.1007/s11120-011-9672-y Authors:Zhang R, Kramer D, Cruz J, Struck K, Sharkey T. |
Thomas D. Sharkey |
| Scott R. Taber | Iron-containing urease in a pathogenic bacterium. Proc. Natl. Acad. Sci. 2011. Proc. Natl Acad. Sci. 108:13095-13099. doi:10.1073/pnas.1106915108 Authors: Carter EL, Tronrud DE, Taber SR, Karplus PA, and Hausinger RP. |
Robert P. Hausinger |
| Christopher L. Towns | Function of UreB in Klebsiella aerogenes urease. Biochemistry 50:9296-9308. 2011. doi:10.1021/bi2011064 Authors: Carter, E. L., J. L. Boer, M. A. Farrugia, N. Flugga, C. L. Towns, and R. P. Hausinger. 2011. |
Robert P. Hausinger |
| 2010 | ||
| Student | Publication | Mentor |
| Dennis Miner | Studies of a Biochemical Factory: Tomato Trichome Deep Expressed Sequence Tag Sequencing and Proteomics. Plant Physiol. 2010.153:1212-1223. doi:10.1104/pp.110.157214 Authors: Schilmiller AL, Miner D, Larson M, McDowell E, Gang DR, Wilkerson C, Last RL. |
Dr. Robert Last |
| Amy A. Abramczyk Linsey C. Seitz |
Synergistic effect of cAMP and palmitate in promoting altered mitochondria function and cell death in HepG2 cells. Experimental Cell Research. 2010. Experimental Cell Research. 316:716-727. doi:10.1016/j.yexcr.2009.12.008 Authors: Zhang, L., Seitz, L. C., Abramczyk, A. M., Liu, Li, and Chan, C. |
Dr. Christina Chan |
| Kimberly L. Anderson | Mutagenesis of Klebsiella aerogenes UreG to probe nickel binding and interactions with other urease-related proteins. 2010. Biochemistry 49:4859-4869. doi:10.1021/bi1004987 Authors: Boer JL, Quiroz-Valenzuela S, Anderson KL, Hausinger RP. |
Robert P. Hausinger |
| Kirk B. Burkhart Victoria Harkins |
A Genomic Perspective on the Potential of Actinobacillus succinogenes for Industrial Succinate Production 2010. BMC Genomics. 11:680. doi:10.1107/S1744309110018981 Authors: McKinlay JB, Laivenieks M, Schindler BD, McKinlay AA, Siddaramappa S, Challacombe JF, Lowry SR, Clum A, Lapidus AL, Burkhart KB, Harkins V, Vieille C. |
Claire Vieille |
| Noelle Byrne | Separation of α- from β-Arylalanines by Nickel Nitrilotriacetate Chromatography. 2010. J. Separation. Sci. 33, 1279–1282. doi:10.1002/jssc.200900675 Authors: Wijerathne S., Byrne N.A., Walker K.D. |
Kevin D. Walker |
| Thomas F. Cooke | Alternative Splicing Expands the Repertoire of Dominant JAZ Repressors of Jasmonate Signaling. 2010. Plant Journal. 63 613-622. doi:10.1111/j.1365-313X.2010.04265.x Authors: HS Chung, TF Cooke, CL Depew, LC Patel, N Ogawa, Y Kobayashi, GA Howe. |
Gregg A. Howe |
| Evan Dayringer | Deciphering a Transcriptional Regulatory Code: Modeling Short-Range Repression in the Drosophila Embryo. 2010. Molecular Systems Biology 6:341. doi:10.1038/msb.2009.97 Authors: Walid D. Fakhouri*, Ahmet Ay* (*co-first authors), Rupinder Sayal, Jacqueline Dresch, Evan Dayringer and David N. Arnosti. |
David Arnosti |
| Stephanie Duperon | Paradoxical Instability-Activity Relationship Defines a Novel Regulatory Pathway for Retinoblastoma Proteins. 2010. MBoC. 21 3890-3901 doi:10.1091/mbc.E10-06-0520 Authors: P Acharya, N Raj, MS Buckley, L Zhang, S Duperon, G Williams, RW Henry, and DN Arnosti. |
David Arnosti |
| Kyung Y. Kim | Acute Cobalt-Induced Lung Injury and the Role of Hypoxia-Inducible Factor 1α in Modulating Inflammation. 2010. Toxicol Sci. 116(2):673-81. doi:10.1093/toxsci/kfq155 Authors: Saini Y, Greenwood KK, Merrill C, Kim KY, Patial S, Parameswaran N, Harkema JR, LaPres JJ |
John J. LaPres |
| Xiaozhou Liu | Thermodynamic Modeling of Transcription: Sensitivity Analysis Differentiates Biological Mechanism from Mathematical Model-Induced Effects. 2010. BMC Systems Biology, 4:142. doi:10.1186/1752-0509-4-142 Authors: JM Dresch, X Liu, DN Arnosti and A Ay |
David Arnosti |
| Sarah Maki | Withanolide-A and Asiatic Acid Modulate Multiple Targets Associated with Amyloid-Beta Precursor Protein Processing and Amyloid-Beta Clearance. 2010. Journal of Natural Products, 73: 1196-1202. doi:10.1021/np900633j Authors: Patil, S. P., Maki, S., Khedkar, S. A., Rigby, A. C., and Chan, C. |
Christina Chan |
| Kendell M. Pawelec | Cell adhesive behavior on thin polyelectrolyte multilayers: cells attempt to achieve homeostasis of its adhesion energy. 2010. Langmuir, 26(15): 12794-12802. doi:10.1021/la101689z Authors: Mehrotra, S., Hunley, C., Pawelec, K. M., Zhang, L., Baek, S., Chan, C. |
Christina Chan |
| M.J. Opperman | The double-stranded RNA-dependent protein kinase differentially regulates insulin receptor substrates 1 and 2 in HepG2 cells 2010. Molecular Biology of the Cell. 21(19):3449-58 doi:10.1091/mbc.E10-06-0481 Authors: Yang, X., Nath, A., Opperman, M. J., and Chan, C |
Christina Chan |
| Rebecca L. Renis | Remodeling of Retinal Fatty Acids in an Animal Model of Diabetes. DIABETES, VOL. 59, January 2010. 59:219-227. doi:10.2337/db09-0728 Authors: Tikhonenko M, Lydic TA, Wang Y, Chen W, Opreanu M, Sochacki A, McSorley KM, Renis RL, Kern T, Jump DB, Reid GE, Busik JV. |
Gavin E. Reid |
| Kyle A. Safran | Enhanced Characterization of Singly Protonated Phosphopeptide Ions by Femtosecond Laser-induced Ionization/Dissociation Tandem Mass Spectrometry (fs-LID-MS/MS). 2010. J. Am. Soc. Mass Spectrom. 21: 2031–2040. doi:10.1016/j.jasms.2010.08.016 Authors: Smith SA, Kalcic CL, Safran KA, Stemmer PM, Dantus M, Reid GE. |
Gavin E. Reid |
| Jason Thomas | Bisamidate and Mixed Amine/Amidate NiN2S2 Complexes as Models for Nickel-Containing Acetyl Coenzyme A Synthase and Superoxide Dismutase: An Experimental and Computational Study. 2010. Inorg. Chem. 49:5393-5406. doi:10.1021/ic9023053 Authors: Mathrubootham V, Thomas J, Staples R, McCraken J, Shearer J, Hegg EL. |
Gavin E. Reid |
| 2009 | ||
| Student | Publication | Mentor |
| Autumn Donohue Maiken Westphal |
Regulation of isoprene emission from poplar leaves throughout a day. 2009. Plant Cell and Environment. 32:939-947. Authors: Wiberley, A.E., A.R. Donohue, M.M. Westphal, T.D. Sharkey. |
Thomas D. Sharkey |
| Joshua Bilsborrow | Enhanced Conversion of Racemic α-Arylalanines to (R)-β-Arylalanines by Coupled Racemase/ Aminomutase Catalysis. 2009. J. Org. Chem. 74(18):6953-9. Authors: Brad M. Cox, Joshua B. Bilsborrow, Kevin D. Walker. |
Kevin D. Walker |
| Ertugrul Dalkic | Integrative Analysis of Cancer Pathway Progression and Coherence. 2009. Proteomics Clin Appl. 3(4): 473–485. Authors: Dalkic E, Nash DE, Fassia MK, Chan C. |
Christina Chan |
| Anjali Rohatgi | Scoring Ligand Similarity in Structure-Based Virtual Screening. 2009. J. Molecular Recognition 22(4) 280-292. Authors: M. I. Zavodszky, A. Rohatgi, J. Van Voorst, H. Yan, and L. A. Kuhn |
Leslie A. Kuhn |
|
Arthur Manoli III Andrew Sawin |
Fatty acid desaturase4 of Arabidopsis encodes a protein distinct from characterized fatty acid desaturases. 2009. Plant J. 60(5):832-9. Authors: Gao J, Ajjawi I, Manoli A, Sawin A, Xu C, Froehlich JE, Last RL, Benning C. |
Christoph Benning |
| Erica Scheller | The Design, Synthesis, and Study of High-Affinity, Highly Selective Geldanamycin Derivatives Targeting Plasmodium falciparum Heat Shock Protein Pfhsp. 2009. Submitted to Bioorganic and Medicinal Chemistry Letters Authors: E. Chen, E. L. Scheller, Y. Shen, H. Omar, D. Kyle, L. A. Kuhn, and D. Wenkert |
Leslie A. Kuhn |
| Lauren Locascio | A Mechanism for Incorporation of Galectin-3 into the Spliceosome through Its Association with U1 snRNP. Biochemistry. 2009. 48, 7705–7712 Authors: Kevin C. Haudek, Patricia G. Voss, Lauren E. Locascio, John L. Wang, and Ronald J. Patterson. |
John L. Wang |
| Kyung Y. Kim | The Role of Hypoxia Inducible Factor 1 (HIF1 ) in Modulating Cobalt-Induced Lung Inflammation. 2009. Am J Physiol Lung Cell Mol Physiol., in press. Authors: Saini Y, Kim KY, Lewandowski R, Bramble L, Harkema JR, LaPres JJ. |
John J LaPres |
| Kendell M. Pawelec | Time controlled protein release from layer-by-layer assembled multilayers functionalized agarose hydrogels. 2009. Advanced Functional Materials, 19: 1-12. Authors: Mehrotra, S., Lynam, D., Maloney, R., Pawelec, K. M., Tuszynski, M., Lee, I., Chan, C., and Sakamoto, J., |
Christina Chan |
| Rebecca Renis | Analysis of Retina and Erythrocyte Glycerophospholipid Alterations in a Rat Model of Type 1 Diabetes. 2009. JALA. 14: 383-399. Authors: Lydic, T.A., Renis, R., Busik, J.V. and Reid, G.E. |
Gavin E. Reid |
| 2008 | ||
| Student | Publication | Mentor |
| Robert Findlan | Using dynamic gene module map analysis to identify targets that modulate free fatty acid and tumor necrosis factor (TNF)-α induced cytotoxicity. Biotechnology Progress, 24(1):29-37. 2008. Authors: Li, Z., Srivastava, S., Findlan, R., and Chan, C., |
Christina Chan |
| Bruce Fraser | Characterization of active site variants of xanthine hydroxylase from Aspergillus nidulans. 2008. Arch Biochem Biophys. 470(1):44-53. Authors: Li M, Müller TA, Fraser BA, Hausinger RP. |
Robert P. Hausinger |
| Nitasha Ahluwalia | Thermotoga maritima TM0298 is a highly thermostable mannitol dehydrogenase. 2008. Appl. Microbiol. Biotechnol. 81:485–495. Authors: Song, S.H., N. Ahluwalia, Leduc, Y., Delbaere, L., and C. Vieille. |
Claire Vieille |
| Seth Dickey | Dissociation of the carbohydrate-binding and splicing activities of galectin-1. 2008. Arch. Biochem. Biophys., 478: 18-25. Authors: Voss, P.G., Gray, R.M., Dickey, S.W., Wang, W., Park, J.W., Kasai, K., Hirabayashi, J., Patterson, R.J., and Wang, J.L. |
John L. Wang |
| Joseph Melrose | Brain region specificity of palmitic acid-induced Alzheimer-like changes in primary neurons. BMC Research Notes, 1: 20. 2008. Authors:Patil, S., Balu, D., Melrose, J. and Chan, C |
Christina Chan |
| Katherine Ruby | Distinct effects on splicing of two monoclonal antibodies directed against the amino-terminal domain of galectin-3. 2008. Arch. Biochem. Biophys. 475: 100-108. Authors: Gray, R.M., Davis, M.J., Ruby, K.M., Voss, P.G., Patterson, R.J., and Wang, J.L. |
John L. Wang |
| 2007 | ||
| Student | Publication | Mentor |
| James Sierakowski | Substituent Effects on the Gas-Phase Fragmentation Reactions of Sulfonium Ion Containing Peptides. 2007. Rapid Commun. Mass Spectrom. 21: 1230-1238. Authors: Sierakowski, J., Amunugama, M., Roberts, K.D and Reid, G.E. |
Gavin E. Reid |
| Matt Moll | A Heteromeric Plastidic Pyruvate Kinase Complex Involved in Seed Oil Biosynthesis in Arabidopsis. 2007. Plant Cell. Jun;19(6):2006-22 Authors: Andre C, Froehlich JE, Moll MR, Benning C. |
Christoph Benning |
| Melody Campbell | Metal ligand substitution and evidence for quinone formation in taurine/a-ketoglutarate dioxygenase. 2007. J. Inorg. Biochem. 101:797-808. Authors: Grzyska, P. K., T. A. Müller, M. G. Campbell, and R. P. Hausinger. |
Robert P. Hausinger |
| Brandon Guelette | Indications of lipid signaling pathways in the phloem exudate of Arabidopsis thaliana and Perilla ocymoides. Current advances in the biochemistry and cell biology of plant lipids. 2007. Proceedings of the 17th International Symposium of Plant Lipids. C.Benning, J. Ohlrogge eds; Michigan State University; E. Lansing, USA; p.92-95. Authors: Guelette, BS, Chamberlin,B, Benning, UF, and Hoffmann-Benning, S |
Susanne Hoffmann-Benning |
| Robert Findlan Natasha Upda Stacey A Schroeder |
Cell adhesion on polyelectrolyte multilayer coated poly(dimethylsiloxane) surfaces with varying topographies. Tissue Engineering, 13(8):2105-17. 2007. Authors: Kidambi, S., Udpa, N, Schroeder, SA, Findlan, R, Lee, I, and Chan, C |
Christina Chan |
| Joseph Melrose | Involvement of astroglial ceramide in palmitic acid-induced Alzheimer-like changes in primary neurons. European Journal of Neuroscience, 26(8):2131-2141. Authors: Patil, S., Melrose, J., and Chan, C., |
Christina Chan |
| Stephen Shaw Matthew Yedwabnick |
Identification of genes that regulate multiple cellular processes/ responses in the context of lipotoxicity in hepatoma cells. BMC Genomics 8:364. 2007. Authors:Srivastava, S., Li, Z., Yang, X., Yedwabnick, M., Shaw, S., and Chan, C. |
Christina Chan |
| 2006 | ||
| Student | Publication | Mentor |
| Elizabeth Bartlett | Identification of a unique splice site variant in SLC39A4 in bovine hereditary zinc deficiency, lethal trait A46: An anmial model of acrodermatitis enteropathica. 2006. Genomics. 88(4):521-526. Authors: Vilma Yuzbasiyan-Gurkan and Elizabeth Bartlett |
Vilma Yuzbasiyan-Gurkan, Depts of Microbiology & Molecular Genetics and Small Animal Clinical Sciences |
| Marci Baranski | Effect of crystal freezing and small molecule binding on internal cavity size in a large protein: X-ray and docking studies of lipoxygenase at ambient and low temperature at 2.0 Ã resolution. J. Acta Cryst D62:766-775, 2006. Authors: Skrzypczak-Jankun E, Borbulevych OY, Zavodszky MI, Baranski MR, Padmanabhan K, Petricek V, Jankun |
Maria I. Zavodszky |
| Zimin Zhao | Maspin retards cell detachment via a novel interaction with the urokinase-type plasminogen activator/urokinase-type plasminogen activator receptor system. 2006. Cancer Research. 66(8) 4173-4181. Authors: S. Yin, J. Lockett, Y. Meng, H Biliran, Jr., G.E. Blouse, N. Reddy, Z. Zhao, X. Lin, J. Anagli, M. Cher, S. Sheng |
Sijie Sheng, Dept of Pathology, Wayne State University School of Medicine |
| Adam Cornish | Phosphatidylglycerol biosynthesis in chloroplasts of Arabidopsis mutants deficient in acyl-ACP glycerol-3- phosphate acyltransferase. 2006. The Plant Journal. 47:296-309. Authors: Changcheng Xu, Bin Yu, Adam J. Cornish, John E. Froehlich, and Christoph Benning |
Christoph Benning |
| Anjali Rohatgi | Discovering new classes of Brugia malayi asparaginyl-tRNA synthetase inhibitors and relating specificity to conformational change. 2006. J. Comput Aided Mol Des. 20(3):159-78. Authors: Sai Chetan K. Sukuru, Thibaut Crepin, Youli Milev, Liesl C. Marsh, Jonathan B. Hill, Regan J. Anderson, Jonathan C. Morris, Anjali Rohatgi, Gavin O’Mahony, Morten Grøtli, Franck Danel, Malcolm G. P. Page, Michael Hartlein, Stephen Cusack, Michael A. Kron, Leslie A. Kuhn |
Leslie Kuhn |
| Nancy Y. Lin | Transport of galectin-3 between the nucleus and cytoplasm. II. Identification of the signal for nuclear export. 2006. Glycobiology vol. 16 no. 7 pp. 612–622. Authors: Su-Yin Li, Peter J. Davidson, Nancy Y. Lin, Ronald J. Patterson, John L. Wang, and Eric J. Arnoys |
John L. Wang |
| Alexis Masserang | Palmitic acid-induced BACE1 upregulation and accumulation of C-terminal fragment of APP in primary cortical neurons. Neuroscience Lett. 406: 55–59. Authors: Patil, S., Sheng, L., Masserang, A., and Chan, C |
Christina Chan |
| Stephen M. Shaw Matthew J. Yedwabnick |
Using a state-space model with hidden variables to infer transcription factor activities. Bioinformatics 22(6): 747–754. 2006. Authors:Li, Z., Shaw, S. M., Yedwabnick, M. J., and Chan, C., |
Lee Kroos |
| 2005 | ||
| Student | Publication | Mentor |
| Jennifer Loconto Scott J. Nowak |
Identification of the Ω4406 Regulatory Region, a Developmental Promoter of Myxococcus xanthus, and a DNA Segment Responsible for Chromosomal Position-Dependent Inhibition of Gene Expression. 2005. J. of Bacteriology, 4149-4162. Authors: Jennifer Loconto, Poorna Viswanathan, Scott J. Nowak, Monica Gloudemans, Lee Kroos |
Lee Kroos |
| Katie Zobeck | Human RNA Polymerase II Elongation in Slow Motion: Role of the TFIIF RAP74 .1 Helix in Nucleoside Triphosphate-Driven Translocation. 2005. Molec Cell Biol. Vol. 25, No. 9. Authors: Chunfen Zhang, Katie L. Zobeck, and Zachary F. Burton |
Zachary Burton |
| Sarah Ward | Purification and properties of the Klebsiella aerogenes UreE metal-binding domain, a functional metallochaperone of urease. 2005. J. Bacteriol. 187:3581-3585. Authors: Mulrooney, S. B., S. K. Ward, and R. P. Hausinger. |
Robert P. Hausinger |
| Greta R. Monterosso | Steady-State and Transient Kinetic Analyses of Taurine/R-Ketoglutarate Dioxygenase: Effects of Oxygen Concentration, Alternative Sulfonates, and Active-Site Variants on the FeIV-oxo Intermediate. 2005. Biochemistry. 44, 3845-3855. Authors: Piotr K. Grzyska, Matthew J. Ryle, Greta R. Monterosso, Jian Liu, David P. Ballou,| and Robert P. Hausinger |
Robert P. Hausinger |
| 2004 | ||
| Student | Publication | Mentor |
| Anthony T. Lagina III | Physiological and biochemical defects in functional interactions of mitochondrial DNA polymerase and DNA-binding mutants of single-stranded DNA-binding protein. 2004. J.Biol. Chem. 279: 17047-17053. Authors: Lefai E, Calleja M, Ruiz de Mena I, Lagina III AT, Kaguni LS, Garesse R. |
Laurie S. Kaguni |
| Sze-ling Ng | A tethered catalysis two-hybrid system to identify protein-protein interactions requiring post-translational modifications. 2004. Nature Biotechnology (22)888-892. Authors: Guo, D, Hazbun, T, Xu, X, Ng, S-L, Fields, S, and Kuo, M-H. |
Min-Hao Kuo |
| Greta R. Monterosso | Direct Detection of Oxygen Intermediates in the Non-Heme Fe Enzyme Taurine/alpha-Ketoglutarate Dioxygenase. 2004. J. Am. Chem. Soc. Biochemistry. 44, 3845-3855. Authors: Proshlyakov, D, Henshaw, T, Monterosso, G, Ryle, M, and Hausinger, R. |
Robert P. Hausinger |
| Mary E. Piper | Characterization of the branching patterns of glycogen branching enzyme truncated on the N-terminus. 2004. Archives of Biochemistry and Biophysics 418:34-38. Authors: Devillers, C., Piper, M., Ballicora, M., Preiss, J. |
Jack Preiss |
| Woo Moon | Efficient production of recombinant human transcription factor IIE. 2004. Protein Expression and Purification. 34:317–323. Authors: Woo J. Moon, Jessica A. Apostol, Aaron J. McBride, Lata I. Shukla, Arik Dvir, Zachary F. Burton |
Zachary Burton |
| Jennifer Dubay | An assay for adenosine 5'-diphosphate (ADP)-glucose pyrophosphorylase that measures the synthesis of radioactive ADP-glucose with glycogen synthase. Analytical Biochemistry. 324 (2004) 52-59. Authors: Yep, A., Bejar, C., Ballicora, M., Dubay, J., Iglesias, A., Preiss, J. |
Jack Preiss |
| 2003 | ||
| Student | Publication | Mentor |
| Michael E. Ruckle Todd A. Lydic |
The sulfolipids 2'-O-acyl-sulfoquinovosyldiacylglycerol and sulfoquinovosyldiacylglycerol are absent from a Chlamydomonas reinhardtii mutant deleted in SQD1. Plant Physiol. 2003. Oct;133(2):864-74. Authors: Riekhof WR, Ruckle ME, Lydic TA, Sears BB, Benning C. |
Christoph Benning |
| Daniel C. Ducat | Overcoming obtacles in DNA sequencing of expression plasmids for short interfering RNAs. 2003. Biotechniques 34:(6)1143-1144. Authors: Ducat DC, Herrera FJ, Triezenberg, SJ. |
Steven J. Triezenberg |
| Tommy Auchtung | Intrinsic tryptophan fluorescence as a probe of metal and a-ketoglutarate binding to TfdA, a mononuclear non-heme iron oxygenase. 2003. J. Inorg. Biochem. 93:66-70. Authors: Dunning Hotopp, J. C., T. A. Auchtung, D. A. Hogan, and R. P. Hausinger. |
Robert P. Hausinger |
| 2002 | ||
| Student | Publication | Mentor |
| Christopher Eakin | The pgp1 mutant locus of Arabidopsis encodes a phosphatidylglycerolphosphate synthase with impaired activity. Plant Physiol. 2002 Jun;129(2):594-604. Authors: Xu C, Hartel H, Wada H, Hagio M, Yu B, Eakin C, Benning C. |
Christoph Benning |
| Janel D. Funk | A key role for the α-1 helix of human RAP74 in the initiation and elongation of RNA chains. 2002. J. Biol. Chem. 277, 46998-47003. Authors: Funk JD, Nedialkov YA, Xu D, Burton ZF |
Zach Burton |
| Jamie Hubert | Digalactosyldiacylglcyerol synthesis in chloroplasts of the Arabidopsis dgd1 mutant. 2002. Plant Physiol. 128:885-895. Authors: Klaus, D., Härtel, H., Fitzpatrick, L., Froehlich, J., Hubert, J., Benning, C., and P. Dörmann. |
Christoph Benning |
| Brooke A. Woolley | Anticoagulants prevent monocrotaline-induced hepatic parenchymal cell injury but not endothelial cell injury in the rat. Toxicol Appl Pharmacol 2002 May 1;180(3):186-96. Authors: Copple BL, Woolley B, Banes A, Ganey PE, Roth RA. |
Robert A. Roth |
| 2001 | ||
| Student | Publication | Mentor |
| Anthony V. Ludlam | Essential amino acids of Escherichia coli DnaC protein in an N-terminal domain interact with DnaB helicase. 2001. J. Biol. Chem. 276:27345-27353. Authors: Ludlam AV, McNatt MW, Carr K, Kaguni JM. |
Jon M. Kaguni |
| Stacy (Trzos) Bloom | Two unrelated phosphoenolpyruvate carboxylase polypeptides physically interact in the high molecular mass isoforms of this enzyme in the unicellular green alga Selenastrum minutum. J Biol Chem. 2001 Apr 20;276(16):12588-97. Authors: Rivoal J, Trzos S, Gage DA, Plaxton WC, Turpin DH. |
Douglas A. Gage |
| Bethany Strunk Jelani Thomas Kevin L. Wright Brandon A. Pabst |
Role of CtBP in transcriptional repression by the Drosophila giant protein. 2001. Dev Biol. Nov 15;239(2):229-40. Authors: Strunk B, Struffi P, Wright K, Pabst B, Thomas J, Qin L, Arnosti DN. |
David Arnosti |
| 2000 | ||
| Student | Publication | Mentor |
| Anthony T. Lagina III | Overexpression of the catalytic subunit of DNA polymerase γ results in depletion of mitochondrial DNA in Drosophila melanogaster. 2000. Mol Gen Genet. Sep: 264( 1-2):37-46. Authors: Lefai E, Calleja M, Ruiz de Mena I, Lagina III AT, Kaguni LS, Garesse R. |
Laurie S. Kaguni |
| Kyle P. Openo | Galectin-3 expression and subcellular localization in senescent human fibroblasts. 2000. Exp Cell Res. Mar 15;255(2):278-90. Authors: Openo KP, Kadrofske MM, Patterson RJ, Wang JL. |
John L. Wang |
| Catherine E. Yurk Roxane L. Amey Amelia R. Anderson Sarah Moore |
dCtBP dependent and independent repression activities of the Drosophila "Knirps protein" 2000. Mol. Cell. Biol. 20: 7247-7258. Authors: Keller SA, Mao Y, Struffi P, Margulies C, Yurk, CE, Anderson AR, Amey RL, Moore S, Ebels JM, Foley K, Corado M, Arnosti DN |
David Arnosti |
| 1999 | ||
| Student | Publication | Mentor |
| Gavin F. Hewitt Tory Priputin Bethany Strunk Roxane L. Amey Brandon A. Pabst |
Transcriptional repression by the Drosophila Giant protein: cis element positioning provides an alternative means of interpreting an effector gradient. 1999. Development 126 (6) 1201-1210. Authors: Hewitt GF, Strunk BS, Priputin T, Wang X-D, Amey R, Pabst, BA, Kosman D, Reinitz J, Arnosti, D.N. |
David Arnosti |
| Michael E. Young | GTP promotes the formation of early-import intermediates but is not required during the translocation step of protein import into chloroplasts. 1999. Plant Physiol. 121:237-243. Authors: Young ME, Keegstra K, Froehlich JE |
Kenneth Keegstra |
| Tommy Auchtung | Cloning and characterization of a sulfonate/a-ketoglutarate dioxygenase from Saccharomyces cerevisiae. 1999. J. Bacteriol. 181:5876-5879. Authors: Hogan,D. A., T. A. Auchtung, and R. P. Hausinger. |
Robert P. Hausinger |
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