Recent Publications

Fisher N, Bricker TM, Kramer DM. “Regulation of photosynthetic cyclic electron flow pathways by adenylate status in higher plant chloroplasts.” Biochim Biophys Acta Bioenerg. (2019) Sep 11;1860(11):148081. doi: 10.1016/j.bbabio.2019.148081

Peng J, Lu J, Hoh D, Dina AS, Shang X, Kramer DM, Chen J. “Identifying Emerging Phenomenon in Long Temporal Phenotyping Experiments.” Bioinformatics. (2019) Jul 15. doi: 10.1093/bioinformatics/btz559

Höhner R, Correa Galvis V, Strand DD, Voelkner C, Kraemer M, Messer M, Dinc F, Sjuts I, Bölter B, Kramer DM, Armbruster U, Kunz HH. “Photosynthesis in Arabidopsis thaliana is unaffected by the function of the vacuolar K+ channel TPK3.” Plant Physiol. (2019) May 3. doi: 10.1104/pp.19.00255

Li J, Weraduwage SM, Peiser AL, Tietz S, Weise SE, Strand DD, Froehlich JE, Kramer DM, Hu J, Sharkey TD. “A Cytosolic Bypass and G6P Shunt in Plants Lacking Peroxisomal Hydroxypyruvate Reductase.” Plant Physiol. (2019) Mar 18;. doi: 10.1104/pp.19.00256

Li J, Tietz S, Cruz JA, Strand DD, Xu Y, Chen J, Kramer DM, Hu J. “Photometric screens identified Arabidopsis peroxisome proteins that impact photosynthesis under dynamic light conditions.” Plant J. (2018) Oct 23. doi: 10.1111/tpj.14134

Du ZY, Lucker BF, Zienkiewicz K, Miller TE, Zienkiewicz A, Sears BB, Kramer DM, Benning C. “Galactoglycerolipid Lipase PGD1 Is Involved in Thylakoid Membrane Remodeling in Response to Adverse Environmental Conditions in Chlamydomonas.” Plant Cell. (2018) Feb;30(2):447-465. doi: 10.1105/tpc.17.00446

Fristedt R, Hu C, Wheatley N, Roy LM, Wachter RM, Savage L, Harbinson J, Kramer DM, Merchant SS, Yeates T, Croce R. “RAF2 is a Rubisco Assembly Factor in Arabidopsis thaliana.” Plant J. (2018) Feb 3;. doi: 10.1111/tpj.13849

Oakley CG, Savage L, Lotz S, Rudd Larson G, Thomashow MF, Kramer DM, Schemske DW. “Genetic basis of photosynthetic responses to cold in two locally adapted populations of Arabidopsis thaliana.” J Exp Bot. (2017) Dec 28;. doi: 10.1093/jxb/erx437

Morales A, Yin X, Harbinson J, Driever SM, Molenaar J, Kramer DM, Struik P. “In silico analysis of the regulation of the photosynthetic electron transport chain in C3 plants.” Plant Physiol. (2017) Sep 18. doi: 10.1104/pp.17.00779

Lucker B, Schwartz E, Kuhlgert S, Ostendorf E, Kramer DM. “Spectroanalysis in Native Gels (SING): Rapid Spectral Analysis of Pigmented Thylakoid Membrane Complexes Separated By Clear Native PAGE.” Plant J. (2017) Sep 2. doi: 10.1111/tpj.13703

Davis GA, Rutherford AW, Kramer DM. “Hacking the thylakoid proton motive force for improved photosynthesis: modulating ion flux rates that control proton motive force partitioning into Δφ and ΔpH.” Philos Trans R Soc Lond B Biol Sci. (2017) Sep 26;372:(1730). doi:10.1098/rstb.2016.0381

Kohzuma K, Froehlich JE, Davis GA, Temple JA, Minhas D, Dhingra A, Cruz JA, Kramer DM. “The Role of Light-Dark Regulation of the Chloroplast ATP Synthase.” Front Plant Sci. (2017) Jul 24;8:1248. doi: 10.3389/fpls.2017.01248

Tietz S, Hall CC, Cruz JA, Kramer DM. “NPQ((T)) : a chlorophyll fluorescence parameter for rapid estimation and imaging of non-photochemical quenching of excitons in photosystem-II-associated antenna complexes.” Plant Cell Environ. (2017) Aug;40(8):1243-1255. doi: 10.1111/pce.12924

Dutta S, Cruz JA, Imran SM, Chen J, Kramer DM, Osteryoung KW. “Variations in chloroplast movement and chlorophyll fluorescence among chloroplast division mutants under light stress.” J Exp Bot. (2017) Jun 22. doi: 10.1093/jxb/erx203

Strand DD, Fisher N, Kramer DM. “The higher plant plastid NAD(P)H dehydrogenase-like complex (NDH) is a high efficiency proton pump that increases ATP production by cyclic electron flow.” J Biol Chem. (2017) May 30. pii: jbc.M116.770792. doi: 10.1074/jbc.M116.770792

Kanazawa A, Ostendorf E, Kohzuma K, Hoh D, Strand DD, Sato-Cruz M, Savage L, Cruz JA, Fisher N, Froehlich JE, Kramer DM. “Chloroplast ATP Synthase Modulation of the Thylakoid Proton Motive Force: Implications for Photosystem I and Photosystem II Photoprotection.” Front Plant Sci. (2017) May 3;8:719. doi: 10.3389/fpls.2017.00719

Yang Y, Xu L, Feng Z, Cruz JA, Savage LJ, Kramer DM, Chen J. “PhenoCurve: capturing dynamic phenotype-environment relationships using phenomics data.” Bioinformatics. (2017) May 1;33(9):1370-1378. doi: 10.1093/bioinformatics/btw673

Strand DD, Livingston AK, Satoh-Cruz M, Koepke T, Enlow HM, Fisher N, Froehlich JE, Cruz JA, Minhas D, Hixson KK, Kohzuma K, Lipton M, Dhingra A, Kramer DM. “Defects in the Expression of Chloroplast Proteins Leads to H(2)O(2) Accumulation and Activation of Cyclic Electron Flow around Photosystem I.” Front Plant Sci. (2017) Jan 13;7:2073. doi: 10.3389/fpls.2016.02073

Kuhlgert S, Austic G, Zegarac R, Osei-Bonsu I, Hoh D, Chilvers MI, Roth MG, Bi K, TerAvest D, Weebadde P, Kramer DM. “MultispeQ Beta: a tool for large-scale plant phenotyping connected to the open PhotosynQ network.” R Soc Open Sci. (2016) Oct 26;3(10):160592 doi: 10.1098/rsos.160592

Yang Y, Xu L, Feng Z, Cruz JA, Savage LJ, Kramer DM, Chen J. “PhenoCurve: Capturing Dynamic Phenotype-Environment Relationships using Phenomics Data.” Bioinformatics. (2016) Oct 24;. doi: 10.1093/bioinformatics/btw673

Abramson BW, Kachel B, Kramer DM, Ducat DC. “Increased Photochemical Efficiency in Cyanobacteria via an Engineered Sucrose Sink.” Plant Cell Physiol. (2016) Oct 13. pii: pcw169. doi: 10.1093/pcp/pcw169

Davis GA, Kanazawa A, Schöttler MA, Kohzuma K, Froehlich JE, Rutherford AW, Satoh-Cruz M, Minhas D, Tietz S, Dhingra A, Kramer DM. “Limitations to photosynthesis by proton motive force-induced photosystem II photodamage.” Elife. (2016) Oct 4;5. pii: e16921. doi: 10.7554/eLife.16921

Campos ML, Yoshida Y, Major IT, de Oliveira Ferreira D, Weraduwage SM, Froehlich JE, Johnson BF, Kramer DM, Jander G, Sharkey TD, Howe GA. “Rewiring of jasmonate and phytochrome B signalling uncouples plant growth-defense tradeoffs.” Nat Commun. (2016) Aug 30;7:12570. doi: 10.1038/ncomms12570

Cruz JA, Savage LJ, Zegarac R, Hall CC, Satoh-Cruz M, Davis GA, Kovac WK, Chen J, Kramer DM. “Dynamic Environmental Photosynthetic Imaging Reveals Emergent Phenotypes.” Cell Syst. (2016) Jun 22;2(6):365-77. doi: 10.1016/j.cels.2016.06.001

Carrillo LR, Froehlich JE, Cruz JA, Savage L, Kramer DM. “Multi-level regulation of the chloroplast ATP synthase: The chloroplast NADPH thioredoxin reductase C (NTRC) is required for redox modulation specifically under low irradiance.” Plant J. (2016) May 28. doi: 10.1111/tpj.13226

Gao Q, Ostendorf E, Cruz JA, Jin R, Kramer DM, Chen J. “Inter-functional analysis of high-throughput phenotype data by non-parametric clustering and its application to photosynthesis.” Bioinformatics. (2016)Jan 1;32(1):67-76. doi: 10.1093/bioinformatics/btv515

Dutta S, Cruz JA, Jiao Y, Chen J, Kramer DM, Osteryoung KW. “Non-invasive, whole-plant imaging of chloroplast movement and chlorophyll fluorescence reveals photosynthetic phenotypes independent of chloroplast photorelocation defects in chloroplast division mutants.” Plant J. (2015)Oct;84(2):428-42. doi: 10.1111/tpj.13009

Strand DD, Fisher N, Davis GA, Kramer DM. “Redox regulation of the antimycin A sensitive pathway of cyclic electron flow around photosystem I in higher plant thylakoids.” Biochim Biophys Acta. (2016)Jan;1857(1):1-6. doi: 10.1016/j.bbabio.2015.07.012

Strand DD, Livingston AK, Satoh-Cruz M, Froehlich JE, Maurino VG, Kramer DM. “Activation of cyclic electron flow by hydrogen peroxide in vivo.” Proc Natl Acad Sci U S A. (2015)Apr 28;112(17):5539-44. doi: 10.1073/pnas.1418223112

Tsabari O, Nevo R, Meir S, Carrillo LR, Kramer DM, Reich Z. “Differential effects of ambient or diminished CO2 and O2 levels on thylakoid membrane structure in light-stressed plants.” Plant J. (2015)Mar;81(6):884-94. doi: 10.1111/tpj.12774

Xu L, Cruz JA, Savage LJ, Kramer DM, Chen J. “Plant photosynthesis phenomics data quality control.” Bioinformatics. (2015)Jun 1;31(11):1796-804. doi: 10.1093/bioinformatics/btu854

Juergens MT, Deshpande RR, Lucker BF, Park JJ, Wang H, Gargouri M, Holguin FO, Disbrow B, Schaub T, Skepper JN, Kramer DM, Gang DR, Hicks LM, Shachar-Hill Y. “The regulation of photosynthetic structure and function during nitrogen deprivation in Chlamydomonas reinhardtii.” Plant Physiol. (2015)Feb;167(2):558-73. doi: 10.1104/pp.114.250530

Juergens MT, Deshpande RR, Lucker BF, Park JJ, Wang H, Gargouri M, Holguin FO, Disbrow B, Schaub T, Skepper JN, Kramer DM, Gang DR, Hicks LM, Shachar-Hill Y. “The regulation of photosynthetic structure and function during nitrogen deprivation in Chlamydomonas reinhardtii.” Plant Physiol. (2015)Feb;167(2):558-73. doi: 10.1104/pp.114.250530

Armbruster U, Carrillo LR, Venema K, Pavlovic L, Schmidtmann E, Kornfeld A, Jahns P, Berry JA, Kramer DM, Jonikas MC. “Ion antiport accelerates photosynthetic acclimation in fluctuating light environments.” Nat Commun. (2014)Nov 13;5:5439. doi: 10.1038/ncomms6439

Attaran E, Major IT, Cruz JA, Rosa BA, Koo AJ, Chen J, Kramer DM, He SY, Howe GA. “Temporal Dynamics of Growth and Photosynthesis Suppression in Response to Jasmonate Signaling.” Plant Physiol. (2014)May 12;165(3):1302-1314. doi: 10.1104/pp.114.239004

Kunz HH, Gierth M, Herdean A, Satoh-Cruz M, Kramer DM, Spetea C, Schroeder JI. “Plastidial transporters KEA1, -2, and -3 are essential for chloroplast osmoregulation, integrity, and pH regulation in Arabidopsis.” Proc Natl Acad Sci U S A. (2014)May 20;111(20):7480-5. doi: 10.1073/pnas.1323899111

Kanazawa A, Blanchard GJ, Szabó M, Ralph PJ, Kramer DM. “The site of regulation of light capture in Symbiodinium: does the peridinin-chlorophyll a-protein detach to regulate light capture?” Biochim Biophys Acta. (2014)Aug;1837(8):1227-34. doi: 10.1016/j.bbabio.2014.03.019